Programmes are focused on raising awareness among youth and countering religious extremism, radio producers say.
NGOs that comply with stricter new regulations will be allowed to work, authorities say.
The recent killing of key terrorist leaders has sent shockwaves among militants along the border.
Strengthening mutual co-operation will "reflect the true economic potential of the two countries", officials say.
Former militants say their leaders misled them and used them as pawns of war for personal gains.